The results from the m complete data sets are combined for the inference. Stata 11s mi command provides full support for all three steps of multiple imputation. Stata correlation pvalues for multiply imputed data stack. The missing data on family income and personal earnings in the 2015 nhis were imputed using multipleimputation methodology. A new framework for managing and analyzing multiply imputed. The mi procedure in the sasstat software is a multiple imputation procedure that creates multiply imputed data. A new set of tools is described for performing analyses of an ensemble of datasets that includes multiple copies of the original data with imputations of missing values, as required for the method.
However, most of the existing missingdata methods do not use the information from nonresponse missingness probabilities. Each imputation includes all of the observed data and imputed data values. In order to use these commands the dataset in memory must be declared or mi set as mi dataset. Analysis and manipulation of the stacked datasets is performed with a new prefix command, mim, which can accommodate data imputed by any method as long as a few simple rules are followed in creating the imputed data. What if you need to analyze multiply imputed data created outside of stata. Zip, which can be downloaded via the datasets link below.
Nov 07, 2016 strategies to deal with missing data to impute or not to impute, that is the question. Overview of multiple imputation and using multiply imputed. Because spss seems to provide only some pooled results e. Missing dataimputation discussion multiple imputation. In statistics, imputation is the process of replacing missing data with substituted values. In the above, we are telling stata that the values of bmi will be imputed while the values of the other variables will not be.
Multiple imputation for incomplete data in epidemiologic. There are three main problems that missing data causes. Figures 2 and and3 3 illustrate such comparisons for the individual item and scale total which displayed the highest proportion of missing data. It should be used within a multiple imputation sequence since missing values are imputed stochastically rather than deterministically. We can never be completely certain about imputed values. Next, each imputed data set now a complete data set is analyzed based on the desired statistical model, such as logistic regression. Unfortunately, there is not a simple criterion to determine when mcmc has converged. Stata, you could use dummy variables rather than categorical variables.
I am dealing with a somewhat large dataset about 40 relevant variables and about 8000 observations based on survey responses. The checklist presented in table 1 is a suggested guide for. Also tried different approaches, but i always have some problems. We propose a nearestneighbour multiple imputation approach to impute a missing at random categorical outcome and to.
Often, the analyst is tempted to rush into multiple imputation without a complete understanding of the missing data problem and associated issues. These are one of the time preference variables 36 % missing data, and. Royston and white 2011 illustrate this fullyintegrated module in stata using real data from an observational study in ovarian cancer. What if you need to analyze multiplyimputed data created outside of stata. Here, analysis of multiply imputed data is achieved by commands that start with mi. Specify the correct functional form of an imputation model.
A new set of tools is described for performing analyses of an ensemble of datasets that includes multiple copies of the original data with imputations of. You can use svy with many mi commands, later articles in our mi series discuss doing so. Pdf tools for analyzing multiple imputed datasets researchgate. Below we use the mi import command to tell stata that our data is multiply imputed. Multiple imputation for incomplete data in epidemiologic studies. Relation between official mi and communitycontributed. A new framework for managing and analyzing multiply imputed data in stata. Before version 11, analysis of such data was possible with the help of ados. Child sex, race, and hispanic origin are imputed using hotdeck imputation while adult 1.
The manuscript by royston and white 2011 describes ice which is the stata module of the approach using the fully automatic pooling to produce multiple imputation. Once the data has been imputed the analysts can just use it as though there was nothing missing. The output dataset contains the original nonmissing data and data for one or more imputations. Census bureau multiple imputation details and purpose in the nsch, missing values are imputed for several demographic variables used in the construction of survey weights. If your data set is large enough that working with it after imputation is slow, the above procedure may help.
Multiple imputation for a single incomplete variable works by constructing an imputation model relating the incomplete variable to other variables and drawing from the posterior predictive distribution of the missing data conditional on the observed data. The course will provide a brief introduction to multiple imputation and will focus on how to perform mi in stata using the mi command. Five ascii data sets containing imputed values for the 2017 survey year are included in the compressed data file incmimp. The approach allows for uncertainty in the missing data. Efficient ways to impute incomplete panel data springerlink. However, the larger the percentage of missing data, the more imputations are necessary to get an accurate estimate. How can i perform post estimation tests with multiply.
Choose from univariate and multivariate methods to impute missing values in continuous. We will use the following definitions and notation. The imputed values at the end of the 10th iteration, combined with the observed data, constitute one imputed data set. Jan 26, 2016 to compare the performance and fit of the mi models, we plot complete case data versus imputed data, overall and by imputation. Multiple imputation mi is a statistical technique for dealing with missing data. A new framework for managing and analyzing multiply. Account for missing data in your sample using multiple imputation. This tells stata how the multiply imputed data is to be stored once the. Wherever possible, do any needed data cleaning, recoding, restructuring, variable creation, or other data management tasks before imputing. However earlier today, i discovered this stata faq by isabel canette and yulia marchenko, entitled combining results other than coefficients in eb with multiply imputed data. Although it is known that the outcome should be included in the imputation model when imputing missing covariate values, it is not known whether it should be imputed. For a list of topics covered by this series, see the introduction.
Stata module to impute missing values using the hotdeck method, statistical software components s366901, boston college department of economics, revised 02 sep 2007. It runs whichever estimation command was specified with the last call to mi estimate together with margins on the imputed datasets combining the results. The algorithm identifies all donor observations that have no missing values for any of the variables specified. In each iteration, mi impute chained first estimates the imputation model, using both the observed data and the imputed data from the previous iteration. Galati, and patrick royston the stata journal 2008 8.
This course will cover the use of stata to perform multipleimputation analysis. I then performed ols multiple regressions of y on x and z in each of the five imputed data sets. If you have enough data, a good a approch is to just remove the rows with missing values and work with the subsample of your data which is complete. An imputation represents one set of plausible values for missing data, and so multiple. The multiply imputed datasets are created using mi impute and are saved into in a single file which contains all 10 imputations as well as the original data.
The coefficients shown in column 3 of table 1 are the means of the five estimates. Include design variables representing the structure of the data in your imputation model. James honaker, gary king, matthew blackwell amelia ii multiply imputes missing data in a single crosssection such as a survey, from a time series like variables collected for each year in a country, or from a timeseriescrosssectional data set such as collected by years for each of several countries. Multiple imputation is frequently used to deal with missing data in healthcare research. Next, plug the estimated fmi into the formula above to figure out how many imputations you need to achieve a certain value of cvse. How can i perform multiple imputation on longitudinal data using ice.
Simple techniques to pool and save multiple imputed data. However, this method may introduce bias and some useful information will be omitted from analysis. A new framework for managing and analyzing multiply imputed data. Now i have five imputed datasets stata 14 format with no missing values. For data analysis, this command often is a composite prefix mi which is followed by a standard stata command. The mim command analyzes multiply imputed data by performing phases 2 and 3. Missing dataimputation discussion multiple imputation and pooling parameter estimates i am using or trying to use spss v. Multiple imputation of missing data using stata data and statistical. The m complete data sets are analyzed by using standard procedures. This data structure permits multiple imputation of itemmissing data for each respondents uniquely named variables in the rectangular data array. Stata correlation pvalues for multiply imputed data. This statement is manifestly false, disproved by the ucla example of svy estimation following mi impute chained. I think theres some confusion here between the actual command mi impute chained and working with data that has been imputed using mi impute chained. When substituting for a data point, it is known as unit imputation.
Once imputation is finished, the wide data set is generally reversed back to the long format for subsequent analysis of imputed longitudinal data. Missing values from the same observation are replaced with values from the same donor observation to preserve correlations. Multiple imputation for continuous and categorical data. This entire process is then repeated to create multiple imputed data sets, such that, to create 10 complete data. In many cases you can avoid managing multiply imputed data completely. How can i perform post estimation tests with multiply imputed. Stata has a suite of multiple imputation mi commands to help users not only impute their data but also explore the patterns of missingness present in the data.
Single imputation methods iris eekhout missing data. Multiple imputation mi is a simulationbased technique for handling missing data. Multiple imputation of multiple multiitem scales when a. Choose one or more of the association measures from tabulate e. Impute the data using a convenient number of imputations. We find that existing multiple imputation procedures that are currently implemented in major statistical packages and that are available to the wide majority of data analysts are limited with regard to handling incomplete panel data. The stata commands are easily applied to the multiply imputed data across the five imputed datasets, but depending upon the type of model you are running and the length of time involved in running the model, it may be more efficient to initially work with one. When using multiple imputation, the number of imputed data sets must be specified and as few as three to five data sets can be adequate. Multiple imputation of multiple multiitem scales when a full. You can download nmissing from within stata by typing search nmissing see how can i. Most variables in the dataset suffer from missing values, so i used amelia ii to impute the data. This is part five of the multiple imputation in stata series. How can i use multiply imputed data where original data is not.
Our data contain missing values, however, and standard casewise deletion would result in a 40% reduction in sample size. Missing data software, advice, and research on handling. I generated 5 series of data of each variable child035 educ035 with multiple imputation method in stata. I want to know the best set of the data for my further analysis. Imputation is very heavily used for census data both in the us and in the uk with census data imputation is used to fill in data from households and people who failed to complete a census form unit nonresponders as well as for questions people. A nonparametric multiple imputation approach for missing. Five ascii data sets containing imputed values for the 2015 survey year are included in the compressed data file incmimp. This entire process is then repeated to create multiple imputed data sets, such that, to create 10 complete data sets, a total of 10.
I could not get clear message from literature to pool the imputed data for generating a clean set. A new framework for managing and analyzing multiply imputed data in stata john b. I am running pearsons correlations on multiply imputed data in stata. For example in a survey, if the variable income has much more missing values for high income respondents due to the fact that people with high income do not want to give that information. The missing values in a variable depend on their hypothetical values. The missing data on family income and personal earnings in the 2017 nhis were imputed using multipleimputation methodology. Comparing joint and conditional approaches jonathan kropko. First, m imputed data sets are generated based on the chosen imputation strategy e. Single imputation denotes that the missing value is replaced by a value.
A regular variable is a variable that is neither imputed nor passive and that has the same values, whether missing or not, in all m. The m option identifies the variable that contains the imputation number. However, the imputed values are assumed to be the real values that would have been observed when the data would have been complete. Step 4 is repeated m times to produce m complete data sets. However, it should raise suspicions, and if the final results with these imputed data are different from the results of complete cases analysis, it raises the question of whether the difference is due to problems with the imputation model. Because ice, mi ice, and mim are not part of official stata, you should install.
For example, sampling weights, strata and cluster identi. Incomplete categorical variables with more than two categories are common in public health data. The generated data formatted in the following series. We want to study the linear relationship between y and predictors x1 and x2. However, you cannot use svy with mi impute chained itself. This is part four of the multiple imputation in stata series. If you want to be a regular participant in statalist, i suggest that you change your username to your full real name, as requested in the registration page and faq you can do it with the contact us button at the bottom of the page. Multipleimputation analysis using statas mi command.